BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB007D03SP1|AL425680
(540 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig894 776 0.0
3x_Contig1790 768 0.0
3x_Contig1773 768 0.0
3x_Contig1614 768 0.0
3x_Contig1164 364 e-100
>3x_Contig894
Length = 1786
Score = 776 bits (388), Expect = 0.0
Identities = 468/496 (94%), Gaps = 2/496 (0%)
Strand = Plus / Minus
Query: 1 agcagraaaattaaaagatcctggcagactcgaaaaggagcaaactatttatgaatttga 60
||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 agcaggagaattgaaagatcctggcagactcgaaaaggagcaaactatttatgaatttga 638
Query: 61 gactgtgccagaagatgaggatgatagctacaacaaaaaaaaagttccaaatggagacaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |
Sbjct: 637 gactgtgccagaagatgaggatgatagctacaacaaaataaaagttccagatggaggcta 578
Query: 121 aaactagraggtggtttactmatccaacttattaaactamagmacctctggtgt-tcata 179
|| | |||||||| || |||| ||| ||||||| | |||||||||| |||||
Sbjct: 577 tggctgggtggtggttttctcatccttcttgttaaacttctgcacctctggtgcgtcata 518
Query: 180 tggttacggtgtttacttgtcatattacatggatagtggaaaatacgaaactrgaggtaa 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 517 tggttacggtgtttacttgtcatattacatggatagtggaaaatacgaaactggaggtaa 458
Query: 240 actcgactatgctgccattgggaggattgagcttaggtgttggggttcttttttctccct 299
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 457 actcgactatgctgccattggg-ggattgagctttggtgttggggttcttttttctccct 399
Query: 300 tgtacaactatatattgataaacacttcaccaaggaagctcatttcgcttggaatcgtca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgtacaactatatattgataaacacttcaccaaggaagctcatttcgcttggaatcgtca 339
Query: 360 ttcagaatgttgccgcgttactagctgccttttctaccaaattatggcaggtgtatctga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttcagaatgttgccgcgttactagctgccttttctaccaaattatggcaggtgtatctga 279
Query: 420 ctcaaggtgtgttcatctcaataggtacaggcgcaatatgctttccaaacactacaatag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctcaaggtgtgttcatctcaataggtacaggcgcaatatgctttccaaacactacaatag 219
Query: 480 ccgcaccatggattag 495
||||||||||| ||||
Sbjct: 218 ccgcaccatggtttag 203
>3x_Contig1790
Length = 27369
Score = 768 bits (384), Expect = 0.0
Identities = 467/496 (94%), Gaps = 2/496 (0%)
Strand = Plus / Plus
Query: 1 agcagraaaattaaaagatcctggcagactcgaaaaggagcaaactatttatgaatttga 60
||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 agcaggagaattgaaagatcctggcagactcgaaaaggagcaaactatttatgaatttga 1103
Query: 61 gactgtgccagaagatgaggatgatagctacaacaaaaaaaaagttccaaatggagacaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |
Sbjct: 1104 gactgtgccagaagatgaggatgatagctacaacaaaataaaagttccagatggaggcta 1163
Query: 121 aaactagraggtggtttactmatccaacttattaaactamagmacctctggtgt-tcata 179
|| | |||||||| || |||| ||| ||||||| | |||||||||| || ||
Sbjct: 1164 tggctgggtggtggttttctcatccttcttgttaaacttctgcacctctggtgcgtcgta 1223
Query: 180 tggttacggtgtttacttgtcatattacatggatagtggaaaatacgaaactrgaggtaa 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1224 tggttacggtgtttacttgtcatattacatggatagtggaaaatacgaaactggaggtaa 1283
Query: 240 actcgactatgctgccattgggaggattgagcttaggtgttggggttcttttttctccct 299
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 1284 actcgactatgctgccattggg-ggattgagctttggtgttggggttcttttttctccct 1342
Query: 300 tgtacaactatatattgataaacacttcaccaaggaagctcatttcgcttggaatcgtca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1343 tgtacaactatatattgataaacacttcaccaaggaagctcatttcgcttggaatcgtca 1402
Query: 360 ttcagaatgttgccgcgttactagctgccttttctaccaaattatggcaggtgtatctga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1403 ttcagaatgttgccgcgttactagctgccttttctaccaaattatggcaggtgtatctga 1462
Query: 420 ctcaaggtgtgttcatctcaataggtacaggcgcaatatgctttccaaacactacaatag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 ctcaaggtgtgttcatctcaataggtacaggcgcaatatgctttccaaacactacaatag 1522
Query: 480 ccgcaccatggattag 495
||||||||||| ||||
Sbjct: 1523 ccgcaccatggtttag 1538
>3x_Contig1773
Length = 8694
Score = 768 bits (384), Expect = 0.0
Identities = 467/496 (94%), Gaps = 2/496 (0%)
Strand = Plus / Plus
Query: 1 agcagraaaattaaaagatcctggcagactcgaaaaggagcaaactatttatgaatttga 60
||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4608 agcaggagaattgaaagatcctggcagactcgaaaaggagcaaactatttatgaatttga 4667
Query: 61 gactgtgccagaagatgaggatgatagctacaacaaaaaaaaagttccaaatggagacaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |
Sbjct: 4668 gactgtgccagaagatgaggatgatagctacaacaaaataaaagttccagatggaggcta 4727
Query: 121 aaactagraggtggtttactmatccaacttattaaactamagmacctctggtgt-tcata 179
|| | |||||||| || |||| ||| ||||||| | |||||||||| || ||
Sbjct: 4728 tggctgggtggtggttttctcatccttcttgttaaacttctgcacctctggtgcgtcgta 4787
Query: 180 tggttacggtgtttacttgtcatattacatggatagtggaaaatacgaaactrgaggtaa 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4788 tggttacggtgtttacttgtcatattacatggatagtggaaaatacgaaactggaggtaa 4847
Query: 240 actcgactatgctgccattgggaggattgagcttaggtgttggggttcttttttctccct 299
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 4848 actcgactatgctgccattggg-ggattgagctttggtgttggggttcttttttctccct 4906
Query: 300 tgtacaactatatattgataaacacttcaccaaggaagctcatttcgcttggaatcgtca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4907 tgtacaactatatattgataaacacttcaccaaggaagctcatttcgcttggaatcgtca 4966
Query: 360 ttcagaatgttgccgcgttactagctgccttttctaccaaattatggcaggtgtatctga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4967 ttcagaatgttgccgcgttactagctgccttttctaccaaattatggcaggtgtatctga 5026
Query: 420 ctcaaggtgtgttcatctcaataggtacaggcgcaatatgctttccaaacactacaatag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5027 ctcaaggtgtgttcatctcaataggtacaggcgcaatatgctttccaaacactacaatag 5086
Query: 480 ccgcaccatggattag 495
||||||||||| ||||
Sbjct: 5087 ccgcaccatggtttag 5102
>3x_Contig1614
Length = 4869
Score = 768 bits (384), Expect = 0.0
Identities = 467/496 (94%), Gaps = 2/496 (0%)
Strand = Plus / Plus
Query: 1 agcagraaaattaaaagatcctggcagactcgaaaaggagcaaactatttatgaatttga 60
||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4255 agcaggagaattgaaagatcctggcagactcgaaaaggagcaaactatttatgaatttga 4314
Query: 61 gactgtgccagaagatgaggatgatagctacaacaaaaaaaaagttccaaatggagacaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |
Sbjct: 4315 gactgtgccagaagatgaggatgatagctacaacaaaataaaagttccagatggaggcta 4374
Query: 121 aaactagraggtggtttactmatccaacttattaaactamagmacctctggtgt-tcata 179
|| | |||||||| || |||| ||| ||||||| | |||||||||| || ||
Sbjct: 4375 tggctgggtggtggttttctcatccttcttgttaaacttctgcacctctggtgcgtcgta 4434
Query: 180 tggttacggtgtttacttgtcatattacatggatagtggaaaatacgaaactrgaggtaa 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4435 tggttacggtgtttacttgtcatattacatggatagtggaaaatacgaaactggaggtaa 4494
Query: 240 actcgactatgctgccattgggaggattgagcttaggtgttggggttcttttttctccct 299
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 4495 actcgactatgctgccattggg-ggattgagctttggtgttggggttcttttttctccct 4553
Query: 300 tgtacaactatatattgataaacacttcaccaaggaagctcatttcgcttggaatcgtca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4554 tgtacaactatatattgataaacacttcaccaaggaagctcatttcgcttggaatcgtca 4613
Query: 360 ttcagaatgttgccgcgttactagctgccttttctaccaaattatggcaggtgtatctga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4614 ttcagaatgttgccgcgttactagctgccttttctaccaaattatggcaggtgtatctga 4673
Query: 420 ctcaaggtgtgttcatctcaataggtacaggcgcaatatgctttccaaacactacaatag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4674 ctcaaggtgtgttcatctcaataggtacaggcgcaatatgctttccaaacactacaatag 4733
Query: 480 ccgcaccatggattag 495
||||||||||| ||||
Sbjct: 4734 ccgcaccatggtttag 4749
>3x_Contig1164
Length = 2302
Score = 364 bits (182), Expect = e-100
Identities = 323/372 (86%), Gaps = 1/372 (0%)
Strand = Plus / Plus
Query: 1 agcagraaaattaaaagatcctggcagactcgaaaaggagcaaactatttatgaatttga 60
||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 agcaggagaattgaaagatcctggcagactcgaaaaggagcaaactatttatgaatttga 1980
Query: 61 gactgtgccagaagatgaggatgatagctacaacaaaaaaaaagttccaaatggagacaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |
Sbjct: 1981 gactgtgccagaagatgaggatgatagctacaacaaaataaaagttccagatggaggcta 2040
Query: 121 aaactagraggtggtttactmatccaacttattaaactamagmacctctggtg-ttcata 179
|| | |||||||| || |||| ||| ||||||| | | |||||||| ||||||
Sbjct: 2041 tggctgggtggtggttttctcatccttcttgttaaacttctggagctctggtggttcata 2100
Query: 180 tggttacggtgtttacttgtcatattacatggatagtggaaaatacgaaactrgaggtaa 239
|||||| |||||||| |||| |||||| ||||||||||||||||| |||||| |||||||
Sbjct: 2101 tggttagggtgtttagttgtgatattagatggatagtggaaaataggaaactggaggtaa 2160
Query: 240 actcgactatgctgccattgggaggattgagcttaggtgttggggttcttttttctccct 299
||| || |||| || |||||| |||||||| || |||||||||| | |||||| | |||
Sbjct: 2161 actggagtatggtgggattggggggattgaggtttggtgttgggggtgttttttgtgcct 2220
Query: 300 tgtacaactatatattgataaacacttcaccaaggaagctcatttcgcttggaatcgtca 359
|||||||||||||||||||||| ||||||||||||||||| |||| | ||||||| || |
Sbjct: 2221 tgtacaactatatattgataaagacttcaccaaggaagctgatttgggttggaatggtga 2280
Query: 360 ttcagaatgttg 371
|| |||||||||
Sbjct: 2281 ttgagaatgttg 2292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.712 1.32
Gapped
Lambda K H
1.39 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4076
Number of Sequences: 1807
Number of extensions: 4076
Number of successful extensions: 107
Number of sequences better than 1.0e-20: 5
length of query: 540
length of database: 10,358,551
effective HSP length: 16
effective length of query: 524
effective length of database: 10,329,639
effective search space: 5412730836
effective search space used: 5412730836
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.5 bits)